The COMBREX Project: Design, Methodology, and Initial Results

Brian P. Anton; Yi Chien Chang; Peter Brown; Han Pil Choi; Lina L. Faller; Jyotsna Guleria; Zhenjun Hu; Niels Klitgord; Ami Levy-Moonshine; Almaz Maksad; Varun Mazumdar; Mark McGettrick; Lais Osmani; Revonda Pokrzywa; John Rachlin; Rajeswari Swaminathan; Benjamin Allen; Genevieve Housman; Caitlin Monahan; Krista Rochussen; Kevin Tao; Ashok S. Bhagwat; Steven E. Brenner; Linda Columbus; Valérie de Crécy-Lagard; Donald Ferguson; Alexey Fomenkov; Giovanni Gadda; Richard D. Morgan; Andrei L. Osterman; Dmitry A. Rodionov; Irina A. Rodionova; Kenneth E. Rudd; Dieter Söll; James Spain; Shuang yong Xu; Alex Bateman; Robert M. Blumenthal; J. Martin Bollinger; Woo Suk Chang; Manuel Ferrer; Iddo Friedberg; Michael Y. Galperin; Julien Gobeill; Daniel Haft; John Hunt; Peter Karp; William Klimke; Carsten Krebs; Dana Macelis; Ramana Madupu; Maria J. Martin; Jeffrey H. Miller; Claire O'Donovan; Bernhard Palsson; Patrick Ruch; Aaron Setterdahl; Granger Sutton; John Tate; Alexander Yakunin; Dmitri Tchigvintsev; Germán Plata; Jie Hu; Russell Greiner; David Horn; Kimmen Sjölander; Steven L. Salzberg; Dennis Vitkup; Stanley Letovsky; Daniel Segrè; Charles DeLisi; Richard J. Roberts; Martin Steffen; Simon Kasif

doi:10.1371/journal.pbio.1001638

The COMBREX Project: Design, Methodology, and Initial Results

Brian P. Anton, Yi Chien Chang, Peter Brown, Han Pil Choi, Lina L. Faller, Jyotsna Guleria, Zhenjun Hu, Niels Klitgord, Ami Levy-Moonshine, Almaz Maksad, Varun Mazumdar, Mark McGettrick, Lais Osmani, Revonda Pokrzywa, John Rachlin, Rajeswari Swaminathan, Benjamin Allen, Genevieve Housman, Caitlin Monahan, Krista RochussenKevin Tao, Ashok S. Bhagwat, Steven E. Brenner, Linda Columbus, Valérie de Crécy-Lagard, Donald Ferguson, Alexey Fomenkov, Giovanni Gadda, Richard D. Morgan, Andrei L. Osterman, Dmitry A. Rodionov, Irina A. Rodionova, Kenneth E. Rudd, Dieter Söll, James Spain, Shuang yong Xu, Alex Bateman, Robert M. Blumenthal, J. Martin Bollinger, Woo Suk Chang, Manuel Ferrer, Iddo Friedberg, Michael Y. Galperin, Julien Gobeill, Daniel Haft, John Hunt, Peter Karp, William Klimke, Carsten Krebs, Dana Macelis, Ramana Madupu, Maria J. Martin, Jeffrey H. Miller, Claire O'Donovan, Bernhard Palsson, Patrick Ruch, Aaron Setterdahl, Granger Sutton, John Tate, Alexander Yakunin, Dmitri Tchigvintsev, Germán Plata, Jie Hu, Russell Greiner, David Horn, Kimmen Sjölander, Steven L. Salzberg, Dennis Vitkup, Stanley Letovsky, Daniel Segrè, Charles DeLisi, Richard J. Roberts, Martin Steffen, Simon Kasif

Research output: Contribution to journal › Article

37 Scopus citations

Original language	English (US)
Article number	e1001638
Journal	PLoS biology
Volume	11
Issue number	8
DOIs	https://doi.org/10.1371/journal.pbio.1001638
State	Published - Aug 1 2013

All Science Journal Classification (ASJC) codes

Neuroscience(all)
Biochemistry, Genetics and Molecular Biology(all)
Immunology and Microbiology(all)
Agricultural and Biological Sciences(all)

Cite this

Anton, B. P., Chang, Y. C., Brown, P., Choi, H. P., Faller, L. L., Guleria, J., Hu, Z., Klitgord, N., Levy-Moonshine, A., Maksad, A., Mazumdar, V., McGettrick, M., Osmani, L., Pokrzywa, R., Rachlin, J., Swaminathan, R., Allen, B., Housman, G., Monahan, C., ... Kasif, S. (2013). The COMBREX Project: Design, Methodology, and Initial Results. PLoS biology, 11(8), [e1001638]. https://doi.org/10.1371/journal.pbio.1001638

Anton, Brian P. ; Chang, Yi Chien ; Brown, Peter ; Choi, Han Pil ; Faller, Lina L. ; Guleria, Jyotsna ; Hu, Zhenjun ; Klitgord, Niels ; Levy-Moonshine, Ami ; Maksad, Almaz ; Mazumdar, Varun ; McGettrick, Mark ; Osmani, Lais ; Pokrzywa, Revonda ; Rachlin, John ; Swaminathan, Rajeswari ; Allen, Benjamin ; Housman, Genevieve ; Monahan, Caitlin ; Rochussen, Krista ; Tao, Kevin ; Bhagwat, Ashok S. ; Brenner, Steven E. ; Columbus, Linda ; de Crécy-Lagard, Valérie ; Ferguson, Donald ; Fomenkov, Alexey ; Gadda, Giovanni ; Morgan, Richard D. ; Osterman, Andrei L. ; Rodionov, Dmitry A. ; Rodionova, Irina A. ; Rudd, Kenneth E. ; Söll, Dieter ; Spain, James ; Xu, Shuang yong ; Bateman, Alex ; Blumenthal, Robert M. ; Bollinger, J. Martin ; Chang, Woo Suk ; Ferrer, Manuel ; Friedberg, Iddo ; Galperin, Michael Y. ; Gobeill, Julien ; Haft, Daniel ; Hunt, John ; Karp, Peter ; Klimke, William ; Krebs, Carsten ; Macelis, Dana ; Madupu, Ramana ; Martin, Maria J. ; Miller, Jeffrey H. ; O'Donovan, Claire ; Palsson, Bernhard ; Ruch, Patrick ; Setterdahl, Aaron ; Sutton, Granger ; Tate, John ; Yakunin, Alexander ; Tchigvintsev, Dmitri ; Plata, Germán ; Hu, Jie ; Greiner, Russell ; Horn, David ; Sjölander, Kimmen ; Salzberg, Steven L. ; Vitkup, Dennis ; Letovsky, Stanley ; Segrè, Daniel ; DeLisi, Charles ; Roberts, Richard J. ; Steffen, Martin ; Kasif, Simon. / The COMBREX Project : Design, Methodology, and Initial Results. In: PLoS biology. 2013 ; Vol. 11, No. 8.

@article{7e1c4affb82c4f278969775c47a170f8,

title = "The COMBREX Project: Design, Methodology, and Initial Results",

author = "Anton, {Brian P.} and Chang, {Yi Chien} and Peter Brown and Choi, {Han Pil} and Faller, {Lina L.} and Jyotsna Guleria and Zhenjun Hu and Niels Klitgord and Ami Levy-Moonshine and Almaz Maksad and Varun Mazumdar and Mark McGettrick and Lais Osmani and Revonda Pokrzywa and John Rachlin and Rajeswari Swaminathan and Benjamin Allen and Genevieve Housman and Caitlin Monahan and Krista Rochussen and Kevin Tao and Bhagwat, {Ashok S.} and Brenner, {Steven E.} and Linda Columbus and {de Cr{\'e}cy-Lagard}, Val{\'e}rie and Donald Ferguson and Alexey Fomenkov and Giovanni Gadda and Morgan, {Richard D.} and Osterman, {Andrei L.} and Rodionov, {Dmitry A.} and Rodionova, {Irina A.} and Rudd, {Kenneth E.} and Dieter S{\"o}ll and James Spain and Xu, {Shuang yong} and Alex Bateman and Blumenthal, {Robert M.} and Bollinger, {J. Martin} and Chang, {Woo Suk} and Manuel Ferrer and Iddo Friedberg and Galperin, {Michael Y.} and Julien Gobeill and Daniel Haft and John Hunt and Peter Karp and William Klimke and Carsten Krebs and Dana Macelis and Ramana Madupu and Martin, {Maria J.} and Miller, {Jeffrey H.} and Claire O'Donovan and Bernhard Palsson and Patrick Ruch and Aaron Setterdahl and Granger Sutton and John Tate and Alexander Yakunin and Dmitri Tchigvintsev and Germ{\'a}n Plata and Jie Hu and Russell Greiner and David Horn and Kimmen Sj{\"o}lander and Salzberg, {Steven L.} and Dennis Vitkup and Stanley Letovsky and Daniel Segr{\`e} and Charles DeLisi and Roberts, {Richard J.} and Martin Steffen and Simon Kasif",

year = "2013",

month = aug

day = "1",

doi = "10.1371/journal.pbio.1001638",

language = "English (US)",

volume = "11",

journal = "PLoS Biology",

issn = "1544-9173",

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Anton, BP, Chang, YC, Brown, P, Choi, HP, Faller, LL, Guleria, J, Hu, Z, Klitgord, N, Levy-Moonshine, A, Maksad, A, Mazumdar, V, McGettrick, M, Osmani, L, Pokrzywa, R, Rachlin, J, Swaminathan, R, Allen, B, Housman, G, Monahan, C, Rochussen, K, Tao, K, Bhagwat, AS, Brenner, SE, Columbus, L, de Crécy-Lagard, V, Ferguson, D, Fomenkov, A, Gadda, G, Morgan, RD, Osterman, AL, Rodionov, DA, Rodionova, IA, Rudd, KE, Söll, D, Spain, J, Xu, SY, Bateman, A, Blumenthal, RM, Bollinger, JM, Chang, WS, Ferrer, M, Friedberg, I, Galperin, MY, Gobeill, J, Haft, D, Hunt, J, Karp, P, Klimke, W, Krebs, C, Macelis, D, Madupu, R, Martin, MJ, Miller, JH, O'Donovan, C, Palsson, B, Ruch, P, Setterdahl, A, Sutton, G, Tate, J, Yakunin, A, Tchigvintsev, D, Plata, G, Hu, J, Greiner, R, Horn, D, Sjölander, K, Salzberg, SL, Vitkup, D, Letovsky, S, Segrè, D, DeLisi, C, Roberts, RJ, Steffen, M & Kasif, S 2013, 'The COMBREX Project: Design, Methodology, and Initial Results', PLoS biology, vol. 11, no. 8, e1001638. https://doi.org/10.1371/journal.pbio.1001638

The COMBREX Project : Design, Methodology, and Initial Results. / Anton, Brian P.; Chang, Yi Chien; Brown, Peter; Choi, Han Pil; Faller, Lina L.; Guleria, Jyotsna; Hu, Zhenjun; Klitgord, Niels; Levy-Moonshine, Ami; Maksad, Almaz; Mazumdar, Varun; McGettrick, Mark; Osmani, Lais; Pokrzywa, Revonda; Rachlin, John; Swaminathan, Rajeswari; Allen, Benjamin; Housman, Genevieve; Monahan, Caitlin; Rochussen, Krista; Tao, Kevin; Bhagwat, Ashok S.; Brenner, Steven E.; Columbus, Linda; de Crécy-Lagard, Valérie; Ferguson, Donald; Fomenkov, Alexey; Gadda, Giovanni; Morgan, Richard D.; Osterman, Andrei L.; Rodionov, Dmitry A.; Rodionova, Irina A.; Rudd, Kenneth E.; Söll, Dieter; Spain, James; Xu, Shuang yong; Bateman, Alex; Blumenthal, Robert M.; Bollinger, J. Martin; Chang, Woo Suk; Ferrer, Manuel; Friedberg, Iddo; Galperin, Michael Y.; Gobeill, Julien; Haft, Daniel; Hunt, John; Karp, Peter; Klimke, William; Krebs, Carsten; Macelis, Dana; Madupu, Ramana; Martin, Maria J.; Miller, Jeffrey H.; O'Donovan, Claire; Palsson, Bernhard; Ruch, Patrick; Setterdahl, Aaron; Sutton, Granger; Tate, John; Yakunin, Alexander; Tchigvintsev, Dmitri; Plata, Germán; Hu, Jie; Greiner, Russell; Horn, David; Sjölander, Kimmen; Salzberg, Steven L.; Vitkup, Dennis; Letovsky, Stanley; Segrè, Daniel; DeLisi, Charles; Roberts, Richard J.; Steffen, Martin; Kasif, Simon.

In: PLoS biology, Vol. 11, No. 8, e1001638, 01.08.2013.

Research output: Contribution to journal › Article

TY - JOUR

T1 - The COMBREX Project

T2 - Design, Methodology, and Initial Results

AU - Anton, Brian P.

AU - Chang, Yi Chien

AU - Brown, Peter

AU - Choi, Han Pil

AU - Faller, Lina L.

AU - Guleria, Jyotsna

AU - Hu, Zhenjun

AU - Klitgord, Niels

AU - Levy-Moonshine, Ami

AU - Maksad, Almaz

AU - Mazumdar, Varun

AU - McGettrick, Mark

AU - Osmani, Lais

AU - Pokrzywa, Revonda

AU - Rachlin, John

AU - Swaminathan, Rajeswari

AU - Allen, Benjamin

AU - Housman, Genevieve

AU - Monahan, Caitlin

AU - Rochussen, Krista

AU - Tao, Kevin

AU - Bhagwat, Ashok S.

AU - Brenner, Steven E.

AU - Columbus, Linda

AU - de Crécy-Lagard, Valérie

AU - Ferguson, Donald

AU - Fomenkov, Alexey

AU - Gadda, Giovanni

AU - Morgan, Richard D.

AU - Osterman, Andrei L.

AU - Rodionov, Dmitry A.

AU - Rodionova, Irina A.

AU - Rudd, Kenneth E.

AU - Söll, Dieter

AU - Spain, James

AU - Xu, Shuang yong

AU - Bateman, Alex

AU - Blumenthal, Robert M.

AU - Bollinger, J. Martin

AU - Chang, Woo Suk

AU - Ferrer, Manuel

AU - Friedberg, Iddo

AU - Galperin, Michael Y.

AU - Gobeill, Julien

AU - Haft, Daniel

AU - Hunt, John

AU - Karp, Peter

AU - Klimke, William

AU - Krebs, Carsten

AU - Macelis, Dana

AU - Madupu, Ramana

AU - Martin, Maria J.

AU - Miller, Jeffrey H.

AU - O'Donovan, Claire

AU - Palsson, Bernhard

AU - Ruch, Patrick

AU - Setterdahl, Aaron

AU - Sutton, Granger

AU - Tate, John

AU - Yakunin, Alexander

AU - Tchigvintsev, Dmitri

AU - Plata, Germán

AU - Hu, Jie

AU - Greiner, Russell

AU - Horn, David

AU - Sjölander, Kimmen

AU - Salzberg, Steven L.

AU - Vitkup, Dennis

AU - Letovsky, Stanley

AU - Segrè, Daniel

AU - DeLisi, Charles

AU - Roberts, Richard J.

AU - Steffen, Martin

AU - Kasif, Simon

PY - 2013/8/1

Y1 - 2013/8/1

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UR - http://www.scopus.com/inward/citedby.url?scp=84883152491&partnerID=8YFLogxK

U2 - 10.1371/journal.pbio.1001638

DO - 10.1371/journal.pbio.1001638

M3 - Article

C2 - 24013487

AN - SCOPUS:84883152491

VL - 11

JO - PLoS Biology

JF - PLoS Biology

SN - 1544-9173

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Access to Document

10.1371/journal.pbio.1001638