TimeView: For comparative gene expression analysis

Mugdha Gadgil, Sarika Mehra, Vivek Kapur, Wei Shou Hu

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

TimeView is a MATLAB® program that compares multiple temporal datasets from microarray experiments under two or more conditions, for example, temporal variation of cellular response upon exposure to different drugs. The current paucity of programs designed to efficiently compare and visualise gene expression profiles in such datasets led us to design TimeView, which also enhances data visualisation by plotting the expression profiles of a large number of genes on a single screen. Availability: TimeView is available free of charge to all users at http://hugroup.cems.umn.edu/Research/Genomics/Timeview/ timeview.htm. To use TimeView, users will require access to the commercial software MATLAB® (version 6.5). A help document is available on the TimeView website. Contact: Wei-Shou Hu (wshu@cems.umn.edu).

Original languageEnglish (US)
Pages (from-to)41-44
Number of pages4
JournalApplied Bioinformatics
Volume5
Issue number1
DOIs
StatePublished - Mar 24 2006

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Gene expression
MATLAB
dose response
temporal variation
genomics
Gene Expression
drugs
gene expression
Data visualization
Microarrays
Genomics
Transcriptome
Websites
Software
genes
Genes
Availability
Research
Pharmaceutical Preparations
Experiments

All Science Journal Classification (ASJC) codes

  • Computer Science Applications
  • Information Systems
  • Agricultural and Biological Sciences(all)

Cite this

Gadgil, Mugdha ; Mehra, Sarika ; Kapur, Vivek ; Hu, Wei Shou. / TimeView : For comparative gene expression analysis. In: Applied Bioinformatics. 2006 ; Vol. 5, No. 1. pp. 41-44.
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TimeView : For comparative gene expression analysis. / Gadgil, Mugdha; Mehra, Sarika; Kapur, Vivek; Hu, Wei Shou.

In: Applied Bioinformatics, Vol. 5, No. 1, 24.03.2006, p. 41-44.

Research output: Contribution to journalArticle

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